Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.010 AlteredExpression disease BEFREE Collectively, these findings demonstrate that downregulation of renal TNF production in response to LS conditions contributes to the regulation of sodium chloride reabsorption via an NKCC2B-dependent mechanism. 31813248 2020
Entrez Id: 91137
Gene Symbol: SLC25A46
SLC25A46
0.030 GeneticVariation disease BEFREE Mutations in the SLC25A46 gene have been identified in mitochondrial diseases that are sometimes classified as Charcot-Marie-Tooth disease type 2, optic atrophy, and Leigh syndrome. 31614134 2019
Entrez Id: 4508
Gene Symbol: ATP6
ATP6
0.500 GeneticVariation disease BEFREE The m.9185 T > C variant in MT-ATP6 has been reported to cause various neurological disorders including late-onset Leigh syndrome (LS). 31500933 2020
Entrez Id: 1384
Gene Symbol: CRAT
CRAT
0.010 GeneticVariation disease BEFREE By performing whole-exome sequencing in a girl affected by Leigh syndrome and her parents, we identified two heterozygous missense variants (p.Tyr110Cys and p.Val569Met) in the carnitine acetyltransferase (CRAT) gene, encoding an enzyme involved in the control of mitochondrial short-chain acyl-CoA concentrations. 31448845 2020
Entrez Id: 4724
Gene Symbol: NDUFS4
NDUFS4
1.000 GeneticVariation disease BEFREE We previously showed that breathing chronic, continuous hypoxia can prevent and even reverse neurological disease in the Ndufs4 knockout (KO) mouse model of complex I (CI) deficiency and Leigh syndrome. 31402314 2019
Entrez Id: 4360
Gene Symbol: MRC1
MRC1
0.010 GeneticVariation disease BEFREE Lynch Syndrome (LS) patients harbor germline mutations in one of several mismatch repair (MMR) genes and are predisposed to the development of colon and endometrial cancers and multiple other cancers types as well. 31392519 2019
Entrez Id: 2475
Gene Symbol: MTOR
MTOR
0.010 Biomarker disease BEFREE Inhibiting the mammalian target of rapamycin (mTOR) pathway has been shown in model mice of Leigh syndrome to extend lifespan and attenuate both the clinical and pathological progression of disease. 31386302 2019
Entrez Id: 4540
Gene Symbol: ND5
ND5
0.470 GeneticVariation disease BEFREE In the concordance of published literature we also observed a large number of variations in ND5 gene (hot spot for LS). 31352295 2019
Entrez Id: 1351
Gene Symbol: COX8A
COX8A
0.050 GeneticVariation disease BEFREE We also observed a total 13 nucleotide variations across COX genes, which is otherwise not common in LS. 31352295 2019
Entrez Id: 9377
Gene Symbol: COX5A
COX5A
0.050 GeneticVariation disease BEFREE We also observed a total 13 nucleotide variations across COX genes, which is otherwise not common in LS. 31352295 2019
Entrez Id: 1371
Gene Symbol: CPOX
CPOX
0.050 GeneticVariation disease BEFREE We also observed a total 13 nucleotide variations across COX genes, which is otherwise not common in LS. 31352295 2019
Entrez Id: 1327
Gene Symbol: COX4I1
COX4I1
0.010 GeneticVariation disease BEFREE Biallelic variants in COX4I1 associated with a novel phenotype resembling Leigh syndrome with developmental regression, intellectual disability, and seizures. 31290619 2019
Entrez Id: 4724
Gene Symbol: NDUFS4
NDUFS4
1.000 Biomarker disease BEFREE The first animal LS model was designed based on NDUFS4 knockdown. 31273716 2019
Entrez Id: 55572
Gene Symbol: FOXRED1
FOXRED1
0.420 PosttranslationalModification disease BEFREE We show in this chapter a new animal model for LS based on silencing of one gene that is reported previously in clinical cases, FOXRED1. 31273716 2019
Entrez Id: 4724
Gene Symbol: NDUFS4
NDUFS4
1.000 Biomarker disease BEFREE A popular mouse model of mitochondrial disease that lacks NADH:ubiquinone oxidoreductase subunit S4 (NDUFS4), a subunit of mitochondrial complex I, phenocopies many traits of the human disease Leigh syndrome, including the development of optic atrophy. 31248988 2019
Entrez Id: 7296
Gene Symbol: TXNRD1
TXNRD1
0.010 Biomarker disease BEFREE A popular mouse model of mitochondrial disease that lacks NADH:ubiquinone oxidoreductase subunit S4 (NDUFS4), a subunit of mitochondrial complex I, phenocopies many traits of the human disease Leigh syndrome, including the development of optic atrophy. 31248988 2019
Entrez Id: 8630
Gene Symbol: HSD17B6
HSD17B6
0.010 Biomarker disease BEFREE A popular mouse model of mitochondrial disease that lacks NADH:ubiquinone oxidoreductase subunit S4 (NDUFS4), a subunit of mitochondrial complex I, phenocopies many traits of the human disease Leigh syndrome, including the development of optic atrophy. 31248988 2019
Entrez Id: 4537
Gene Symbol: ND3
ND3
0.490 GeneticVariation disease BEFREE Transition from Leigh syndrome to MELAS syndrome in a patient with heteroplasmic MT-ND3 m.10158T>C. 31178082 2019
Entrez Id: 4541
Gene Symbol: ND6
ND6
0.470 GeneticVariation disease BEFREE The child was found to have a variant in the MT-ND6 gene (m.14484T>C), most commonly associated with Leber hereditary optic neuropathy, despite a phenotype more closely resembling Leigh syndrome. 31129100 2019
Entrez Id: 4537
Gene Symbol: ND3
ND3
0.490 GeneticVariation disease BEFREE The m.10191T>C mutation in the mitochondrial DNA gene encoding in the respiratory chain complex I (CI) subunit of MTND3 results in the substitution of a highly conserved amino acid (p.Ser45Pro) within the ND3 protein, leading to CI dysfunction and causing a broad clinical spectrum of disorders that includes LS. 31105631 2019
Entrez Id: 55572
Gene Symbol: FOXRED1
FOXRED1
0.420 Biomarker disease CLINGEN Congenital lactic acidosis, cerebral cysts and pulmonary hypertension in an infant with FOXRED1 related complex 1 deficiency. 31065540 2019
Entrez Id: 8050
Gene Symbol: PDHX
PDHX
0.030 GeneticVariation disease BEFREE Whole exome sequencing of a patient with Leigh-like syndrome identified homozygous protein-truncating variants in two genes associated with Leigh syndrome; a reported pathogenic variant in PDHX (NP_003468.2:p.(Arg446*)), and an uncharacterized variant in complex I (CI) assembly factor TIMMDC1 (NP_057673.2:p.(Arg225*)). 30981218 2019
Entrez Id: 51300
Gene Symbol: TIMMDC1
TIMMDC1
0.010 GeneticVariation disease BEFREE Whole exome sequencing of a patient with Leigh-like syndrome identified homozygous protein-truncating variants in two genes associated with Leigh syndrome; a reported pathogenic variant in PDHX (NP_003468.2:p.(Arg446*)), and an uncharacterized variant in complex I (CI) assembly factor TIMMDC1 (NP_057673.2:p.(Arg225*)). 30981218 2019
Entrez Id: 374291
Gene Symbol: NDUFS7
NDUFS7
0.550 Biomarker disease CLINGEN A Drosophila Mitochondrial Complex I Deficiency Phenotype Array. 30972103 2019
Entrez Id: 4723
Gene Symbol: NDUFV1
NDUFV1
0.330 Biomarker disease CLINGEN A Drosophila Mitochondrial Complex I Deficiency Phenotype Array. 30972103 2019